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1

Frequent amplification and overexpression of CCND1 in male breast cancer

Maarit Bärlund, Tuula Kuukasjärvi, Kirsi Syrjäkoski, Anssi Auvinen, Anne Kallioniemi

Journal:

International Journal of Cancer

Year:

2004

Language:

english

File:

PDF, 117 KB

english, 2004

2

MicroRNA-135b regulates ERα, AR and HIF1AN and affects breast and prostate cancer cell growth

Aakula, Anna, Leivonen, Suvi-Katri, Hintsanen, Petteri, Aittokallio, Tero, Ceder, Yvonne, Børresen-Dale, Anne-Lise, Perälä, Merja, Östling, Päivi, Kallioniemi, Olli

Journal:

Molecular Oncology

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

3

Genetic alterations in lobular breast cancer by comparative genomic hybridization

Takafumi Nishizaki, Karen Chew, Lisa Chu, Jorma Isola, Anne Kallioniemi, Noel Weidner, Frederic M. Waldman

Journal:

International Journal of Cancer

Year:

1997

Language:

english

File:

PDF, 71 KB

english, 1997

4

Increased copy number at 17q22-q24 by CGH in breast cancer is due to high-level amplification of two separate regions

Maarit Bärlund, Mika Tirkkonen, Farahnaz Forozan, Minna M. Tanner, Olli Kallioniemi, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

1997

Language:

english

File:

PDF, 126 KB

english, 1997

5

Molecular cytogenetics of primary breast cancer by CGH

Mika Tirkkonen, Minna Tanner, Ritva Karhu, Anne Kallioniemi, Jorma Isola, Olli-P. Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

1998

Language:

english

File:

PDF, 94 KB

english, 1998

6

Concomitant gastrin and ERBB2 gene amplifications at 17q12–q21 in the intestinal type of gastric cancer

Virve Vidgren, Asta Varis, Arto Kokkola, Outi Monni, Pauli Puolakkainen, Stig Nordling, Farahnaz Forozan, Anne Kallioniemi, Marja-Leena Vakkari, Eero Kivilaakso, Sakari Knuutila

Journal:

Genes, Chromosomes and Cancer

Year:

1999

Language:

english

File:

PDF, 177 KB

english, 1999

7

Improved procedure for fluorescence in situ hybridization on tissue microarrays

Claus L. Andersen, Galen Hostetter, Artyom Grigoryan, Guido Sauter, Anne Kallioniemi

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 278 KB

english, 2001

8

Improved technique for analysis of formalin-fixed, paraffin-embedded tumors by fluorescence in situ hybridization

Eija Hyytinen, Tapio Visakorpi, Anne Kallioniemi, Olli-P. Kallioniemi, Jorma J. Isola

Journal:

Cytometry Part A

Year:

1994

Language:

english

File:

PDF, 699 KB

english, 1994

9

Computer image analysis of comparative genomic hybridization

Jim Piper, Denis Rutovitz, Damir Sudar, Anne Kallioniemi, Olli-P. Kallioniemi, Frederic M. Waldman, Joe W. Gray, Dan Pinkel

Journal:

Cytometry Part A

Year:

1995

Language:

english

File:

PDF, 3.37 MB

english, 1995

10

Frequent amplification of 8q24, 11q, 17q, and 20q-specific genes in pancreatic cancer

Eija H. Mahlamäki, Maarit Bärlund, Minna Tanner, Ludmila Gorunova, Mattias Höglund, Ritva Karhu, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2002

Language:

english

File:

PDF, 576 KB

english, 2002

11

Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer

Maarit Bärlund, Outi Monni, J. Donald Weaver, Päivikki Kauraniemi, Guido Sauter, Mervi Heiskanen, Olli-P. Kallioniemi, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2002

Language:

english

File:

PDF, 884 KB

english, 2002

12

CDK4 is a probable target gene in a novel amplicon at 12q13.3–q14.1 in lung cancer

Harriet Wikman, Penny Nymark, Aki Väyrynen, Sonata Jarmalaite, Anne Kallioniemi, Kaisa Salmenkivi, Katri Vainio-Siukola, Kirsti Husgafvel-Pursiainen, Sakari Knuutila, Maija Wolf, Sisko Anttila

Journal:

Genes, Chromosomes and Cancer

Year:

2005

Language:

english

File:

PDF, 317 KB

english, 2005

13

Bone morphogenetic protein 7 is widely overexpressed in primary breast cancer

Emma-Leena Alarmo, Jenita Rauta, Päivikki Kauraniemi, Ritva Karhu, Tuula Kuukasjärvi, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2006

Language:

english

File:

PDF, 252 KB

english, 2006

14

Pancreatic adenocarcinoma—Genetic portrait from chromosomes to microarrays

Ritva Karhu, Eija Mahlamäki, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2006

Language:

english

File:

PDF, 471 KB

english, 2006

15

Characterization of the 7q21-q22 amplicon identifies ARPC1A, a subunit of the Arp2/3 complex, as a regulator of cell migration and invasion in pancreatic cancer

Eeva Laurila, Kimmo Savinainen, Riina Kuuselo, Ritva Karhu, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 550 KB

english, 2009

16

19q13 amplification is associated with high grade and stage in pancreatic cancer

Riina Kuuselo, Ronald Simon, Ritva Karhu, Pierre Tennstedt, Andreas H. Marx, Jakob R. Izbicki, Emre Yekebas, Guido Sauter, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2010

Language:

english

File:

PDF, 143 KB

english, 2010

17

Both inhibition and enhanced expression of miR-31 lead to reduced migration and invasion of pancreatic cancer cells

Eeva M. Laurila, Saana Sandström, Laura M. Rantanen, Reija Autio, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2012

Language:

english

File:

PDF, 2.57 MB

english, 2012

18

Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors

Olli-P. Kallioniemi, Anne Kallioniemi, Jim Piper, Jorma Isola, Fred M. Waldman, Joe W. Gray, Dan Pinkel

Journal:

Genes, Chromosomes and Cancer

Year:

1994

Language:

english

File:

PDF, 1.07 MB

english, 1994

19

Identification of gains and losses of DNA sequences in primary bladder cancer by comparative genomic hybridization

Anne Kallioniemi, Olli-P. Kallioniemi, Gil Citro, Guido Sauter, Sandy Devries, Russell Kerschmann, Peter Caroll, Fred Waldman

Journal:

Genes, Chromosomes and Cancer

Year:

1995

Language:

english

File:

PDF, 602 KB

english, 1995

20

Mutations in the BRCA2 interacting DSS1 are not a risk factor for male breast cancer

Kirsi Syrjäkoski, Jussi Jäntti, Anne Kallioniemi, Ritva Karhu

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 59 KB

english, 2007

21

MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer

Riina Kuuselo, Kimmo Savinainen, Saana Sandström, Reija Autio, Anne Kallioniemi

Journal:

International Journal of Cancer

Year:

2011

Language:

english

File:

PDF, 635 KB

english, 2011

22

Molecular cytogenetics: Diagnosis and prognostic assessment

Joe W. Gray, Anne Kallioniemi, Olli Kallioniemi, Maria Pallavicini, Fred Waldman, Daniel Pinkel

Journal:

Current Opinion in Biotechnology

Year:

1992

Language:

english

File:

PDF, 1.05 MB

english, 1992

23

CGH microarrays and cancer

Anne Kallioniemi

Journal:

Current Opinion in Biotechnology

Year:

2008

Language:

english

File:

PDF, 206 KB

english, 2008

24

A strategy for identifying putative causes of gene expression variation in human cancers

Sampsa Hautaniemi, Markus Ringnér, Päivikki Kauraniemi, Reija Autio, Henrik Edgren, Olli Yli-Harja, Jaakko Astola, Anne Kallioniemi, Olli-Pekka Kallioniemi

Journal:

Journal of the Franklin Institute

Year:

2004

Language:

english

File:

PDF, 310 KB

english, 2004

25

Clinical and functional target validation using tissue and cell microarrays

Spyro Mousses, Anne Kallioniemi, Päivikki Kauraniemi, Abdel Elkahloun, Olli-P Kallioniemi

Journal:

Current Opinion in Chemical Biology

Year:

2002

Language:

english

File:

PDF, 69 KB

english, 2002

26

Analysis of BMP4 and BMP7 signaling in breast cancer cells unveils time-dependent transcription patterns and highlights a common synexpression group of genes

Alejandra Rodriguez-Martinez, Emma-Leena Alarmo, Lilli Saarinen, Johanna Ketolainen, Kari Nousiainen, Sampsa Hautaniemi, Anne Kallioniemi

Journal:

BMC Medical Genomics

Year:

2011

Language:

english

File:

PDF, 842 KB

english, 2011

27

Amplifications of oncogeneerbB-2 and chromosome 20q in breast cancer determined by differentially competitive polymerase chain reaction

Guoren Deng, Mei Yu, Ling-Chun Chen, Dan Moore, Wayne Kurisu, Anne Kallioniemi, Frederick M. Waldman, Colin Collins, Helene S. Smith

Journal:

Breast Cancer Research and Treatment

Year:

1996

Language:

english

File:

PDF, 943 KB

english, 1996

28

The serine-threonine protein phosphatasePPM1Dis frequently activated through amplification in aggressive primary breast tumours

Jenita Rauta, Emma-Leena Alarmo, Päivikki Kauraniemi, Ritva Karhu, Tuula Kuukasjärvi, Anne Kallioniemi

Journal:

Breast Cancer Research and Treatment

Year:

2006

Language:

english

File:

PDF, 336 KB

english, 2006

29

A comprehensive expression survey of bone morphogenetic proteins in breast cancer highlights the importance ofBMP4andBMP7

Emma-Leena Alarmo, Tuula Kuukasjärvi, Ritva Karhu, Anne Kallioniemi

Journal:

Breast Cancer Research and Treatment

Year:

2007

Language:

english

File:

PDF, 366 KB

english, 2007

30

Parallel inhibition of cell growth and induction of cell migration and invasion in breast cancer cells by bone morphogenetic protein 4

Johanna M. Ketolainen, Emma-Leena Alarmo, Vilppu J. Tuominen, Anne Kallioniemi

Journal:

Breast Cancer Research and Treatment

Year:

2010

Language:

english

File:

PDF, 527 KB

english, 2010

31

High-resolution CGH analysis on cDNA microarrays for direct identification of amplification target genes

Hyman, Elizabeth, Monni, Outi, Rozenblum, Ester, Mousses, Spyro, Bittner, Michael, Chen, Yidong, Kallioniemi, Olli, Kallioniemi, Anne

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 30 KB

english, 2001

32

17q23 amplification in breast cancer leads to overexpression of multiple genes

Monni, Outi, Barlund, Maarit, Kononen, Juha, Sauter, Guido, Kallioniemi, Olli, Kallioniemi, Anne

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 79 KB

english, 2001

33

A recurrent mutation in PALB2 in Finnish cancer families

Erkko, Hannele, Xia, Bing, Nikkilä, Jenni, Schleutker, Johanna, Syrjäkoski, Kirsi, Mannermaa, Arto, Kallioniemi, Anne, Pylkäs, Katri, Karppinen, Sanna-Maria, Rapakko, Katrin

Journal:

Year:

2007

Language:

english

File:

PDF, 271 KB

english, 2007

34

NAD(P)H:quinone oxidoreductase 1 NQO1*2 genotype (P187S) is a strong prognostic and predictive factor in breast cancer

Fagerholm, Rainer, Hofstetter, Barbara, Tommiska, Johanna, Aaltonen, Kirsimari, Vrtel, Radek, Syrjäkoski, Kirsi, Kallioniemi, Anne, Kilpivaara, Outi, Mannermaa, Arto, Kosma, Veli-Matti

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 526 KB

english, 2008

35

Effects of Herceptin treatment on global gene expression patterns in HER2-amplified and nonamplified breast cancer cell lines

Kauraniemi, Päivikki, Hautaniemi, Sampsa, Autio, Reija, Astola, Jaakko, Monni, Outi, Elkahloun, Abdel, Kallioniemi, Anne

Journal:

Year:

2003

Language:

english

File:

PDF, 167 KB

english, 2003

36

From chromosomal alterations to target genes for therapy: integrating cytogenetic and functional genomic views of the breast cancer genome

Outi Monni, Elizabeth Hyman, Spyro Mousses, Maarit Barlund, Anne Kallioniemi, Olli-P Kallioniemi

Journal:

Seminars in Cancer Biology

Year:

2001

Language:

english

File:

PDF, 2.78 MB

english, 2001

37

Extent of 20Q13 amplicons in primary breast cancer and association with indicators of poor prognosis

Minna Tanner, Mika Tirkkonen, Anne Kallioniemi, Kaija Holli, Colin Collins, Joe W. Gray, Jorma Isola, O-P. Kallioniemi

Journal:

Cancer Genetics and Cytogenetics

Year:

1995

Language:

english

File:

PDF, 173 KB

english, 1995

38

Search for large genomic alterations of the BRCA1 gene in a Finnish population

Eeva Laurila, Kirsi Syrjäkoski, Kaija Holli, Anne Kallioniemi, Ritva Karhu

Journal:

Cancer Genetics and Cytogenetics

Year:

2005

Language:

english

File:

PDF, 168 KB

english, 2005

39

PPM1D silencing by RNA interference inhibits proliferation and induces apoptosis in breast cancer cell lines with wild-type p53

Jenita Pärssinen, Emma-Leena Alarmo, Ritva Karhu, Anne Kallioniemi

Journal:

Cancer Genetics and Cytogenetics

Year:

2008

Language:

english

File:

PDF, 573 KB

english, 2008

40

Large genomic BRCA2 rearrangements and male breast cancer

Ritva Karhu, Eeva Laurila, Anne Kallioniemi, Kirsi Syrjäkoski

Journal:

Cancer Detection and Prevention

Year:

2006

Language:

english

File:

PDF, 124 KB

english, 2006

41

Bone morphogenetic protein − 4 and − 5 in pancreatic cancer—Novel bidirectional players

Siru Virtanen, Emma-Leena Alarmo, Saana Sandström, Minna Ampuja, Anne Kallioniemi

Journal:

Experimental Cell Research

Year:

2011

Language:

english

File:

PDF, 808 KB

english, 2011

42

Novel findings in gene expression detected in human osteosarcoma by cDNA microarray

Maija Wolf, Wa'el El-Rifai, Maija Tarkkanen, Juha Kononen, Massimo Serra, Erik Fink Eriksen, Inkeri Elomaa, Anne Kallioniemi, Olli-Pekka Kallioniemi, Sakari Knuutila

Journal:

Cancer Genetics and Cytogenetics

Year:

2000

Language:

english

File:

PDF, 235 KB

english, 2000

43

Genome screening by comparative genomic hybridization

Farahnaz Forozan, Ritva Karhu, Juha Kononen, Anne Kallioniemi, Olli-P. Kallioniemi

Journal:

Trends in Genetics

Year:

1997

Language:

english

File:

PDF, 376 KB

english, 1997

44

Deciphering downstream gene targets of PI3K/mTOR/p70S6K pathway in breast cancer

Henna Heinonen, Anni Nieminen, Matti Saarela, Anne Kallioniemi, Juha Klefström, Sampsa Hautaniemi, Outi Monni

Journal:

Year:

2008

Language:

english

File:

PDF, 1.48 MB

english, 2008

45

Array-based gene expression, CGH and tissue data defines a 12q24 gain in neuroblastic tumors with prognostic implication

Maija Wolf, Miikka Korja, Ritva Karhu, Henrik Edgren, Sami Kilpinen, Kalle Ojala, Spyro Mousses, Anne Kallioniemi, Hannu Haapasalo

Journal:

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

46

Gene Copy Number Analysis by Fluorescencein SituHybridization and Comparative Genomic Hybridization

Anne Kallioniemi, Tapio Visakorpi, Ritva Karhu, Dan Pinkel, Olli-P. Kallioniemi

Journal:

Year:

1996

Language:

english

File:

PDF, 160 KB

english, 1996

47

A physical map of chromosome 20 established using fluorescence in situ hybridization and digital image analysis

Trond Stokke, Colin Collins, Wen-Lin Kuo, David Kowbel, Farideh Shadravan, Minna Tanner, Anne Kallioniemi, Olli-P. Kallioniemi, Daniel Pinkel, Larry Deaven, Joe W. Gray

Journal:

Year:

1995

Language:

english

File:

PDF, 494 KB

english, 1995

48

Bone morphogenetic protein 4—a fascinating regulator of cancer cell behavior

Anne Kallioniemi

Journal:

Cancer Genetics

Year:

2012

Language:

english

File:

PDF, 268 KB

english, 2012

49

Identification of differentially expressed genes after PPM1D silencing in breast cancer

Jenita Pärssinen, Emma-Leena Alarmo, Sofia Khan, Ritva Karhu, Mauno Vihinen, Anne Kallioniemi

Journal:

Year:

2008

Language:

english

File:

PDF, 792 KB

english, 2008

50

BMP7 influences proliferation, migration, and invasion of breast cancer cells

Emma-Leena Alarmo, Jenita Pärssinen, Johanna M. Ketolainen, Kimmo Savinainen, Ritva Karhu, Anne Kallioniemi

Journal:

Year:

2009

Language:

english

File:

PDF, 314 KB

english, 2009